A B C D E F G H I K L M N O P Q R S T U V W X Z

S

score - Variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
 
Section - Class in gov.nih.nlm.nls.nlp.textfeatures
The Section class holds sections of medLine citations, sections of papers such as Title, abstract, intro, methods summary.
Section(GlobalBehavior, String, String, StringBuffer) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Section
This is a constructor for Section
Section(GlobalBehavior, String, String, String, Vector) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Section
This is a constructor for Section
SECTION - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Section
 
semanticTypes - Variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
 
SemanticTypesChecker - Class in gov.nih.nlm.nls.nlp.textfeatures
SemanticTypesChecker Thu May 05 09:49:12 GMT-05:00 2005, divita Initial Version
SemanticTypesChecker(GlobalBehavior) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.SemanticTypesChecker
This is a constructor for SemanticTypesChecker
SEMICOLON - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Category
 
Sentence - Class in gov.nih.nlm.nls.nlp.textfeatures
Sentence A sentence is made up of a set of phrases.
Sentence() - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Sentence
This is a constructor for Sentence This constructor has no parameters.
Sentence(String, int, int) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Sentence
This is a constructor for Sentence
Sentence(String, int, int, Vector) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Sentence
This is a constructor for Sentence
SENTENCE_BOUNDARY - Static variable in class gov.nih.nlm.nls.nlp.tokenizer.TokenLabel
 
SENTENCE_BOUNDRARY_PUNCTUATION - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.TokenChars
 
SENTENCE_BREAK - Static variable in class gov.nih.nlm.nls.nlp.tokenizer.SentenceTokenizer
 
SentenceTokenizer - Class in gov.nih.nlm.nls.nlp.tokenizer
SentenceTokenizer This class breaks a given string into sentences.
SentenceTokenizer(GlobalBehavior) - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.SentenceTokenizer
This is a constructor for SentenceTokenizer
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
serialization version unique identifier for this class.
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
serialization version unique identifier for this class.
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Span
serialization version unique identifier for this class.
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Token
 
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
serialization version unique identifier for this class.
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_SemanticTypePointer
serialization version unique identifier for this class.
serialVersionUID - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_StringPointer
serialization version unique identifier for this class.
setAddedNew(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setAddedNew
setAllSources(UMLSSourceInfo[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method setAllSources adds all known sources for this concept.
setAllVariants(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method setAllVariants sets all Variants for this phrase.
setBaseForm(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setBaseForm
setBeginCharacter(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setBeginCharacter sets the beginning offset of the span.
setBeginToken(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setbeginToken sets the position of the start token of a lexical element in the sentence.
setBufferedReader(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Collection
Method setBufferedReader opens the fileStream of the file for this collection.
setCandidate(Candidate) - Method in class gov.nih.nlm.nls.nlp.textfeatures.CandidateToken
Method setCandidate (set the back pointer to the candidate )
setCategory(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setCategory
setCategory(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setCategory
setCentrality() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setCentrality The centrality value is simply 1 if the string involves the head of the phrase and 0 otherwise.
setChunks(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Sentence
Method setChunks
setChunkSize() - Method in class gov.nih.nlm.nls.nlp.indexMaker.IndexMaker
Method setChunkSize determines if you are processing terms, tokens or phrases
setCitationForm(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setCitationForm
setClassName(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.DocumentFactory
 
setConcept(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setConcept
setControlOption(int) - Method in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalizationOptions
Method setControlOption
setCorpusFrequency(String, int) - Method in class gov.nih.nlm.nls.nlp.indexMaker.IndexMaker
Method setCorpusFrequency
setCtr(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Sentence
Method setCtr sets the counter relative to the section.
setCUI(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setCUI
setCuiHash(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setCuiHash sets the cui as an int.
setCuis(int[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_StringPointer
Method setCuis
setDerivedPhrases(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method setDerivedPhrases attaches a set of derived phrases to this Phrase.
setDistance(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setDistance
setDistance(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setDistance
setDocumentFrequency(String, int) - Method in class gov.nih.nlm.nls.nlp.indexMaker.IndexMaker
Method setDocumentFrequency
setDocumentName(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Document
Method setDocumentName
setDocumentName(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method setDocumentName We need citation tags to carry to each sentence, to mirror MetaMap's reporting format.
setDocuments(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Collection
Method setDocuments
setEndCharacter(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setEndCharacter sets the trailing offset of the span.
setendToken(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setendToken sets the position of the end token of a lexical element in the sentence.
setEui(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setEui
setFoundInFullTable() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setFoundInFullTable
setFoundInNounAdjDerivationAndUniqAcronymFilteredTable() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setFoundInNounAdjDerivationAndUniqAcronymFilteredTable
setFoundInNounAdjDerivationFilteredTable() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setFoundInNounAdjDerivationFilteredTable
setFoundInUniqAcronymsFilteredTable() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setFoundInUniqAcronymsFilteredTable
setGlobalBehavior(GlobalBehavior) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Document
Method setGlobalBehavior
setGlobalBehaviors(GlobalBehavior) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Collection
Method setGlobalBehaviors
setHasHead() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method setHasHead lets us know quickly if this is a "nasty" phrase or not.
setHead() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setHead sets this lexicalElement from the phrase as the head of the phrase.
setHeadednessFromTokens() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setHeadednessFromTokens sets the head of this lexical element if any the tokens of this lexical element participated in the head of the noun phrase that this lexical element came from.
setHistory(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setHistory
setHistory(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setHistory
setId(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
Method setId sets the id.
setInflectedForm(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
setInflectedForm
setInflection(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setInflection
setInflection(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setInflection
setInteractiveMode() - Method in class gov.nih.nlm.nls.nlp.tokenizer.DelimitedTextTokenizer
Method setInteractiveMode
setInteractiveMode() - Method in class gov.nih.nlm.nls.nlp.tokenizer.FreeTextTokenizer
Method setInteractiveMode
setInteractiveMode() - Method in class gov.nih.nlm.nls.nlp.tokenizer.PubMedCitationFormatTokenizer
Method setInteractiveMode
setInteractiveMode() - Method in class gov.nih.nlm.nls.nlp.tokenizer.PubMedMEDLINEFormatTokenizer
Method setInteractiveMode
setInteractiveMode() - Method in interface gov.nih.nlm.nls.nlp.tokenizer.TokenizerInterface
Method setInteractiveMode
setIsHead(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setIsHead
setIsNotHead() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setIsNotHead Tell this lexical element, sorry, it's no longer the head.
setLabel(StringBuffer) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
Method setLabel
setLexicalElementPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
setLexicalElementPosition sets the position of this lexicalElement within the sentence.
setLexicalElementPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setLexicalElementPosition sets the position of this lexical Element in the sentence.
setLexicalElements(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Sentence
setLexicalElements adopts the incoming vector of lexicalElements as the lexicalElements that span the sentence.
setLexicalEntries(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
setLexicalEntries sets the set of lexical entries associated with this lexical Element
setLexiconMatchingAlgorithm(int) - Method in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalizationOptions
Method setLexiconMatchingAlgorithm
setMatchCandidatePos(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MatchMap
Method setMatchCandidatePos:
setMetaMapNounPhraseTokenPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
Method setMetaMapNounPhraseTokenPosition tags this token with a mapping from this token to a mapping that the original MetaMap program would have done.
setMsuMarker(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
setMsuMarker sets the Minimal sentence unit marker.
setName(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method setName sets the section Name
setNonRecursiveNP(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setNonRecursiveNP or simple noun phrase.
setNormalizedTerm(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setNormalizedTerm sets the Variant term, lowercased, devoid of punctuation - this is supposed to match the normalization that was done to create the normalized string, string sui table.
setNp() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setNp creates the minimal Nps that the mapper will use to match on.
setNpForCompositePhrase() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setNpForCompositePhrase creates the minimal Nps that the mapper will use to match on.
setNumberOfTokensInSentence(int) - Method in class gov.nih.nlm.nls.nlp.lexicallookup.TokenBitVector
Method setNumberOfTokensInSentence.
setNumConnected() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setNumConnected
setNumValidMaps(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setNumValidMaps
setNumWords(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setNumWords
setOn(int) - Method in class gov.nih.nlm.nls.nlp.lexicallookup.TokenBitVector
setOn informs the bitArrayList that the token that this bit refers to has been absorbed into a lexicalElement.
setOriginalString(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
setOriginalString adds the "Original" unmodified string to the object.
setOriginalString(Sentence) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setOriginalString assigns the original string for the phrase from the sentence passed in, along with the span.
setParent(LexicalElement) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setParent preserves the link from the original LexicalElement to this variant
setPartOfGenitive() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
Method setPartOfGenitive when called, marks this token as being part of a possessive.
setPartOfHead(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
Method setPartOfHead is a mechanism to set wheather or not this token is part of a lexicalElement that has been identified by the parser as the head lexical element of a noun phrase.
setPhraseCharSpan(int, int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
Method setPhraseCharSpan
setPhraseCharSpan(Span) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setPhraseCharSpan
setPhraseLexicalElementPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
setPhraseLexicalElementPosition records the position of this lexicalElement within the phrase.
setPhraseLexicalElementPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
Method setPhraseLexicalElementPosition sets the position of the lexical element within the phrase.
setPhrasePosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setPhrasePosition sets the position of this phrase in the sentence.
setPhrasePosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setPhrasePosition puts the number of the phrase from the beginning of the sentence.
setPhrasePosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
setPhrasePosition records the position of this variant (as a lexical Element) within the phrase.
setPhrases(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Sentence
Method setPhrases attaches the phrases to this sentence.
setPhraseSpans() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setPhraseSpans sets the phraseWord and phraseChar spans.
setPhraseTokenPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
Method setPhraseTokenPosition.
setPhraseTokenPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setPhraseTokenPosition.
setPhraseWordPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
Method setPhraseWordPosition sets the position of the word within the phrase.
setPhraseWordSpan(Span) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setPhraseWordSpan
setPOSCategory() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Set the part of speech category of the lexicalElement.
setPosCheck(boolean[], int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setPosCheck NOTE: Setting up the posCheckSum as a binary counter/sum of what positions are actually set in posCheck.
setProcessMe(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method setProcessMe
setRefCandidatePos(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MatchMap
Method setRefCandidatePos:
setReferencePos(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setReferencePos
setRestricted() - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_SemanticTypePointer
Method setRestricted marks this type as being inappropriate to be used based on either the --restrictToSTS or the --excludeSTS options
setRestricted() - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLSSourceInfo
Method setRestricted marks this source as being inappropriate to be used based on either the --restrictToSources or the --excludeSources options
setScore() - Method in class gov.nih.nlm.nls.nlp.textfeatures.FinalMapping
Method setScore
setScore(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method setScore
setScore(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_StringPointer
Method setScore
setSections(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Document
Method setSections
setSemanticInfo(String, String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setSemanticInfo Set the Semantic code and definition for this candidate.
setSemanticTypes(UMLS_SemanticTypePointer[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setSemanticTypes Set the Semantic Types
setSentencePosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setSentencePosition puts the position of the sentence, counted from the beginning of the paragraph
setSentences(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Document
Method setSentences attaches a set of sentences the first section of the document
setSentences(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method setSentences
setSettings(GlobalBehavior) - Method in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalLookupAPI
Method setSettings
setShapeCategory(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setShapeCategory This method is used to set the category for a shape.
setShapeType(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setShapeType sets the type of shape this lexical element is.
setSourceInfoComparator(SourceInfoComparator) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method setSourceInfoComparator - This is a convience method.
setSourceTermType(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLSSourceInfo
Method setExpandedSourceTermType this retieves the information from the sourceTermType.txt file from the data/200X/mmtx directory
setSpan(int, int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
setSpan sets the span.
setSpan() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method setSpan will derive the span from the set of lexical elements it contains.
setSpan(int, int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
Method setSpan sets the span.
setSpan(Span) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setSpan
setStrings() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setStrings fills in the details of what the original string for this phrase is to be, it's span, and, if appropriate, what the string looks like devoid of determiners, and trailing punctuation..
setStrippedString() - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
Method setStrippedString trims the string of (bounding) whitespace and strips punctuation from the string.
setTag(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method setTag sets the section tag.
setTaggerCategory(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setTaggerCategory sets the part of speech category for the lexical element.
setTermProcessing() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
setTermProcessing This method tells this phrase that it is build during term processing.
setTokenPosition(int, int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setTokenPosition sets the positions of the tokens of a lexical element in the sentence.
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
setTokens adds a set of CandidateTokens as tokenized by the nlp.tokenizer
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setTokens add this set of tokens to the lexical element
setTokens(Vector, boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method setTokens add this set of tokens to the lexical element
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalEntry
Method setTokens adds this set of tokens to the lexical Entry to describe the tokenized form of this lexical Entry.
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Sentence
setTokens adds a vector of tokens to the sentence.
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Shape
Method setTokens
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_StringPointer
Method setTokens associates a set of nlp.tokenized tokens to this container of this.name
setTokens(Vector) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Variant
Method setTokens adds the set of tokens that make up this variant
setTreeCodes(String) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setTreeCodes
setTreeCodes(String[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setTreeCodes
setTrimmedString() - Method in class gov.nih.nlm.nls.nlp.textfeatures.MmObject
setTrimmedString creates a copy of the originalString that has been stripped of newlines and redundant whitespace.
setTuis(int[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method setTuis
setType(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Shape
Method setType sets the type from the Shape class.
setType(int) - Method in class gov.nih.nlm.nls.nlp.tokenizer.MyPattern
Method setType
setUMLS_SemanticTypes(UMLS_SemanticTypePointer[]) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method UMLS_SemanticTypes
setUMLS_StringPointer(UMLS_StringPointer) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setUMLS_StringPointer attaches a UMLS_StringPointer to this candidate.
setUMLS_StringPointer(ArrayList) - Method in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
Method UMLS_StringPointer
setUMLSConceptPointer(UMLS_ConceptPointer) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setUMLS_ConceptPointer attaches a UMLS_ConceptPointer to this candidate.
setUp() - Method in class gov.nih.nlm.nls.nlp.lexicallookup.testcases.LexicalLookupAPITestCases
Method setUp
setUp() - Method in class gov.nih.nlm.nls.nlp.tokenizer.testcases.ShapeTokenizerTestCase1
Method setUp
setUsedAtAll(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setUsedAtAll
setUsedLocally(boolean) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method setUsedLocally
setWordPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
setWordPosition sets the position of the word in the sentence.
setWordPosition(int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Token
setWordPosition sets the position of the word within the sentence.
setWordPosition(int) - Method in interface gov.nih.nlm.nls.nlp.textfeatures.TokenInterface
setWordPosition sets the position of the word within the sentence.
setWordSpan(int, int) - Method in class gov.nih.nlm.nls.nlp.textfeatures.Span
Method setWordSpan
SHAPE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Category
 
SHAPE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
 
SHAPE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Msu
 
Shape - Class in gov.nih.nlm.nls.nlp.textfeatures
Shape Thu Jun 27 13:06:00 EDT 2002, divita Initial Version
Shape() - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Shape
This is a constructor for Shape This constructor has no parameters.
Shape(String, int) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Shape
This is a constructor for Shape
SHAPE_ENHANSED - Static variable in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalizationOptions
 
shapeTokenize(Sentence) - Method in class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Method shapeTokenize breaks a sentence into rough tokens or unlabeled chunks.
shapeTokenize(String, int) - Method in class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Method shapeTokenize breaks a string into rough tokens or unlabeled chunks.
shapeTokenize(Vector) - Method in class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Method shapeTokenize Itterate through these chunks and label the chunks that we can.
shapeTokenize(Chunk) - Method in class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Method shapeTokenize Given a Chunk, label if this chunk is a date, money, real number, number ...
shapeTokenizeAux(Chunk) - Method in class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Method shapeTokenizeAux Given a Chunk, label if this chunk is a date, money, real number, number ...
ShapeTokenizer - Class in gov.nih.nlm.nls.nlp.tokenizer
ShapeTokenizer Wed Jun 26 13:41:28 EDT 2002, divita Initial Version
ShapeTokenizer() - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
Constructor for ShapeTokenizer
ShapeTokenizer(GlobalBehavior) - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizer
This is a constructor for ShapeTokenizer
ShapeTokenizerMain - Class in gov.nih.nlm.nls.nlp.tokenizer
ShapeTokenizerMain tokenizes Collections into Documents, Documents into sections, sentences and tokens.
ShapeTokenizerMain() - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizerMain
This is a constructor for TokenizerMain
ShapeTokenizerMain(GlobalBehavior) - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.ShapeTokenizerMain
This is a constructor for TokenizerMain
ShapeTokenizerTestCase1 - Class in gov.nih.nlm.nls.nlp.tokenizer.testcases
ShapeTokenizerTestCase1 handles test cases for the ShapeTokenizer Tue Mar 23 19:44:21 EST 2004, divita Initial Version
ShapeTokenizerTestCase1(String) - Constructor for class gov.nih.nlm.nls.nlp.tokenizer.testcases.ShapeTokenizerTestCase1
This is a constructor for ShapeTokenizerTestCase1
shouldBeProcessed() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Section
Method shouldBeProcessed returns whether or not this section should be mapped to concepts
simpleParse(Sentence) - Method in class gov.nih.nlm.nls.nlp.parser.Tfa
Tfa parse breaks Breaks a Sentence into phrases.
SINGLE_QUOTE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.TokenChars
 
SINGLE_QUOTE_S - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.TokenChars
 
SINGLE_WORD_LOOKUP - Static variable in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalLookup
 
SINGLE_WORD_MATCH - Static variable in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalizationOptions
 
SINGLE_WORD_MATCH_WITH_EXCEPTIONS - Static variable in class gov.nih.nlm.nls.nlp.lexicallookup.LexicalizationOptions
 
SINGLEQUOTE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Category
 
SINGULAR - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Inflection
 
SLASH - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Category
 
sortAscByPhrasePos() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method sortAscByPhrasePos
sortDescByScore() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method sortDescByScore
sortFinalDescbyCheckSum() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method sortFinalDescbyCheckSum
sortFinalDescByScore() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Phrase
Method sortFinalDescByScore
sortMatchMap() - Method in class gov.nih.nlm.nls.nlp.textfeatures.Candidate
Method sortMatchMap
sourceCheck(Candidate) - Method in class gov.nih.nlm.nls.nlp.textfeatures.VocabularySourceChecker
Method sourceCheck returns true if the source(s) are are valid
SourceInfoComparator - Class in gov.nih.nlm.nls.nlp.textfeatures
SourceInfoComparator compares UMLSSourceInfo objects based on their presidence Thu May 12 17:43:07 GMT-05:00 2005, divita Initial Version
SourceInfoComparator() - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.SourceInfoComparator
 
sourceInfoComparator - Variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
 
sources - Variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
 
SPACE - Static variable in class gov.nih.nlm.nls.nlp.nlsstrings.Lex
 
SPACE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.TokenChars
 
SPACE - Static variable in class gov.nih.nlm.nls.nlp.tokenizer.TokenLabel
 
SPACE_s - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.TokenChars
 
Span - Class in gov.nih.nlm.nls.nlp.textfeatures
Span records the offsets of the mmObjects in terms of character positions.
Span() - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Span
This is a constructor for Span This constructor has no parameters.
Span(int, int) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Span
This is a constructor for Span
Span(Span) - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Span
This is a constructor for Span.
SPELLING_VARIANT - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Variant
 
SPELLING_VARIANT_COST - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Variant
 
step1(GlobalBehavior) - Static method in class gov.nih.nlm.nls.nlp.lexicon.LexiconIndex
Method step1
step2(GlobalBehavior) - Static method in class gov.nih.nlm.nls.nlp.lexicon.LexiconIndex
Method step2
stripOffNonTokenTokens(String) - Method in class gov.nih.nlm.nls.nlp.tokenizer.SentenceTokenizer
Method stripOffNonTokenTokens Strip off the things that got artificially stuck on before, such as the token <SENTENCE_BREAK> that was artifically put on during section tokenization when that information was made obvious from html tags such as <li> or <p> but where the sentence tokenizer would have missed it because it was not a normal English break.
stripPossessives(String) - Static method in class gov.nih.nlm.nls.nlp.nlsstrings.NLSStrings
 
stripPossessiveTokens() - Method in class gov.nih.nlm.nls.nlp.textfeatures.LexicalElement
Method stripPossessiveTokens Strip Posessives from the lexical element () This is being done for mapping purposes, where the index is likewise created with possessives stripped off.
Sui - Class in gov.nih.nlm.nls.nlp.textfeatures
Sui is a class to convert Sui strings to a hash and visa versa.
Sui() - Constructor for class gov.nih.nlm.nls.nlp.textfeatures.Sui
This is a constructor for Sui This constructor has no parameters.
suis - Variable in class gov.nih.nlm.nls.nlp.textfeatures.UMLS_ConceptPointer
 
SUPERLATIVE - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Inflection
 
SYNONYM - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Variant
 
SYNONYM_COST - Static variable in class gov.nih.nlm.nls.nlp.textfeatures.Variant
 
syntacticUninvertString(String) - Static method in class gov.nih.nlm.nls.nlp.nlsstrings.NLSStrings
invert strings of the form "word1, word2" to "word2 word1" if no prepositions or conjunction are present.

A B C D E F G H I K L M N O P Q R S T U V W X Z
The use and distribution of this material is subject to the terms and conditions included in the file SPECIALIST_NLP_TOOLS_TERMS_AND_CONDITIONS.TXT, located in the root directory of the distribution.